diff --git a/DESCRIPTION b/DESCRIPTION
index 800f818..98e7178 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,6 +1,6 @@
Package: checked
Title: Systematically Run R CMD Checks
-Version: 0.5.5
+Version: 0.6.0
Authors@R:
c(
person(
@@ -47,7 +47,6 @@ Imports:
utils (>= 3.6.2),
tools
Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.3.3
Suggests:
remotes,
testthat (>= 3.0.0),
@@ -56,3 +55,4 @@ Suggests:
Config/Needs/website:
r-lib/asciicast
Config/testthat/edition: 3
+Config/roxygen2/version: 8.0.0
diff --git a/NAMESPACE b/NAMESPACE
index 0affc8a..dacb0cf 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -97,6 +97,7 @@ S3method(report_sleep,default)
S3method(report_sleep,reporter_ansi_tty)
S3method(report_sleep,reporter_basic_tty)
S3method(report_start_checks,"NULL")
+S3method(report_start_checks,default)
S3method(report_start_checks,reporter_ansi_tty)
S3method(report_start_setup,"NULL")
S3method(report_start_setup,reporter_ansi_tty)
@@ -126,6 +127,10 @@ S3method(start_task,igraph.vs)
S3method(start_task,install_task)
S3method(task_graph,task)
S3method(task_graph,task_graph)
+S3method(version,"NULL")
+S3method(version,default)
+S3method(version,pkg_origin)
+S3method(version,task)
export(STATUS)
export(check_pkgs)
export(check_rev_deps)
@@ -156,6 +161,7 @@ import(cli)
import(options)
importFrom(R6,R6Class)
importFrom(callr,r_process)
+importFrom(callr,r_process_options)
importFrom(cli,make_spinner)
importFrom(igraph,"E<-")
importFrom(igraph,"V<-")
diff --git a/NEWS.md b/NEWS.md
index dfe7132..ee12e79 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,3 +1,10 @@
+# checked 0.6.0
+
+* Add 'install_cmdargs' option which can be used to specify R CMD args
+ for subprocesses installing packages.
+
+* Add version information R CMD check diff output.
+
# checked 0.5.5
* Add 'install_opts_to_inherit' option which can be used to specify parameters
diff --git a/R/install.R b/R/install.R
index 2f697af..cda0750 100644
--- a/R/install.R
+++ b/R/install.R
@@ -1,6 +1,6 @@
#' @importFrom utils packageName install.packages
#' @importFrom R6 R6Class
-#' @importFrom callr r_process
+#' @importFrom callr r_process r_process_options
install_process <- R6::R6Class(
"install_process",
inherit = callr::r_process,
@@ -17,8 +17,15 @@ install_process <- R6::R6Class(
if (!dir.exists(lib)) dir.create(lib, recursive = TRUE)
private$package <- pkgs
self$log <- log
+ cmdargs <- options::opt("install_cmdargs")
+ hooks <- if (any(c("--vanilla", "--no-init-file") %in% cmdargs)) {
+ callr::r_process_options()$load_hook
+ } else {
+ ""
+ }
private$callr_r_bg(
- function(..., opts_to_inherit) {
+ function(..., opts_to_inherit, hooks) {
+ eval(parse(text = hooks))
do.call(options, opts_to_inherit)
invisible(capture.output(withCallingHandlers(
utils::install.packages(..., quiet = FALSE, verbose = TRUE),
@@ -33,14 +40,15 @@ install_process <- R6::R6Class(
lib = lib,
opts_to_inherit = do.call(
options, options::opt("install_opts_to_inherit")
- )
+ ),
+ hooks = hooks
),
libpath = libpaths,
stdout = self$log,
stderr = "2>&1",
system_profile = options::opt("install_system_profile"),
user_profile = options::opt("install_user_profile"),
- cmdargs = c("--slave", "--no-save", "--no-restore", "--vanilla"),
+ cmdargs = cmdargs,
env = env
)
},
diff --git a/R/options.R b/R/options.R
index 4ab78fd..fbbc00f 100644
--- a/R/options.R
+++ b/R/options.R
@@ -88,7 +88,11 @@ options::define_options(
"available_packages_filters",
"HTTPUserAgent",
"pkgType"
- )
+ ),
+
+ "`character` vector of args passed to the separate R package installation
+ process.",
+ install_cmdargs = c("--slave", "--no-save", "--no-restore")
)
#' @eval options::as_roxygen_docs()
diff --git a/R/reporter.R b/R/reporter.R
index 3b5c43b..5d22b46 100644
--- a/R/reporter.R
+++ b/R/reporter.R
@@ -113,6 +113,7 @@ report_start_checks <- function(reporter, checker, ..., envir = parent.frame())
}
#' @rdname reporters-internal
+#' @export
report_start_checks.default <- function(reporter, checker, ..., envir = parent.frame()) { # nolint
NULL
}
diff --git a/R/results.R b/R/results.R
index 7f22bab..ffad37c 100644
--- a/R/results.R
+++ b/R/results.R
@@ -169,6 +169,7 @@ results_revdep_check <- function(dev, release, output = NULL, ...) {
}),
names = CHECK_ISSUES_TYPES,
package = dev_check$package,
+ version = dev_check$version,
class = c("rcmdcheck_rev_dep_results", "rcmdcheck_results")
)
}
@@ -372,13 +373,25 @@ rcmdcheck_from_json <- function(file) {
#' @export
print.rcmdcheck_rev_dep_results <- function(x, ...) {
- cat(sprintf("%s package R CMD check diff \n", attr(x, "package")))
+ cat(
+ sprintf(
+ "%s (v%s) package R CMD check diff \n",
+ attr(x, "package"),
+ attr(x, "version")
+ )
+ )
NextMethod()
}
#' @export
print.rcmdcheck_check_results <- function(x, ...) {
- cat(sprintf("%s package R CMD check \n", attr(x, "package")))
+ cat(
+ sprintf(
+ "%s (v%s) package R CMD check \n",
+ attr(x, "package"),
+ attr(x, "version")
+ )
+ )
NextMethod()
}
diff --git a/R/task.R b/R/task.R
index 5186b2a..c24086e 100644
--- a/R/task.R
+++ b/R/task.R
@@ -168,3 +168,27 @@ package.task <- function(x) {
package.pkg_origin <- function(x) {
x$package
}
+
+version <- function(x) {
+ UseMethod("version")
+}
+
+#' @export
+version.default <- function(x) {
+ stop("Unrecognized type")
+}
+
+#' @export
+version.NULL <- function(x) {
+ ""
+}
+
+#' @export
+version.task <- function(x) {
+ version(x$origin)
+}
+
+#' @export
+version.pkg_origin <- function(x) {
+ x$version
+}
diff --git a/man/DB_COLNAMES.Rd b/man/DB_COLNAMES.Rd
index 62bb09e..a4d8884 100644
--- a/man/DB_COLNAMES.Rd
+++ b/man/DB_COLNAMES.Rd
@@ -1,12 +1,8 @@
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/utils-enums.R
-\docType{data}
\name{DB_COLNAMES}
\alias{DB_COLNAMES}
\title{Available packages database dependencies columns}
-\format{
-An object of class \code{character} of length 6.
-}
\usage{
DB_COLNAMES
}
diff --git a/man/DEP.Rd b/man/DEP.Rd
index c21dfd5..da35480 100644
--- a/man/DEP.Rd
+++ b/man/DEP.Rd
@@ -1,12 +1,8 @@
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/utils-enums.R
-\docType{data}
\name{DEP}
\alias{DEP}
\title{Dependencies categories}
-\format{
-An object of class \code{enum} (inherits from \code{factor}) of length 5.
-}
\usage{
DEP
}
diff --git a/man/DEP_STRONG.Rd b/man/DEP_STRONG.Rd
index bb530c0..d7dc4b0 100644
--- a/man/DEP_STRONG.Rd
+++ b/man/DEP_STRONG.Rd
@@ -1,12 +1,8 @@
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/utils-enums.R
-\docType{data}
\name{DEP_STRONG}
\alias{DEP_STRONG}
\title{Strong dependencies categories}
-\format{
-An object of class \code{enum} (inherits from \code{factor}) of length 3.
-}
\usage{
DEP_STRONG
}
diff --git a/man/RELATION.Rd b/man/RELATION.Rd
index 95d510e..2d26fb2 100644
--- a/man/RELATION.Rd
+++ b/man/RELATION.Rd
@@ -1,12 +1,8 @@
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/utils-enums.R
-\docType{data}
\name{RELATION}
\alias{RELATION}
\title{Relation types}
-\format{
-An object of class \code{enum} (inherits from \code{factor}) of length 2.
-}
\usage{
RELATION
}
diff --git a/man/STATUS.Rd b/man/STATUS.Rd
index 30d3ccb..4f63644 100644
--- a/man/STATUS.Rd
+++ b/man/STATUS.Rd
@@ -1,12 +1,8 @@
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/utils-enums.R
-\docType{data}
\name{STATUS}
\alias{STATUS}
\title{Check execution status categories}
-\format{
-An object of class \code{enum} (inherits from \code{factor}) of length 4.
-}
\usage{
STATUS
}
@@ -14,11 +10,10 @@ STATUS
Check execution status categories
}
\seealso{
-Other checks:
-\code{\link{check_pkgs}()},
-\code{\link{check_rev_deps}()},
+Other checks:
+\code{\link[=check_pkgs]{check_pkgs()}},
+\code{\link[=check_rev_deps]{check_rev_deps()}},
\code{\link{checker}},
-\code{\link{new_checker}()}
+\code{\link[=new_checker]{new_checker()}}
}
\concept{checks}
-\keyword{datasets}
diff --git a/man/check_pkgs.Rd b/man/check_pkgs.Rd
index 422ffd2..40ec72d 100644
--- a/man/check_pkgs.Rd
+++ b/man/check_pkgs.Rd
@@ -47,10 +47,10 @@ first identifies and installs, in parallel, all dependencies required
to check the package. Then, it runs \verb{R CMD check} for each specified package.
}
\seealso{
-Other checks:
+Other checks:
\code{\link{STATUS}},
-\code{\link{check_rev_deps}()},
+\code{\link[=check_rev_deps]{check_rev_deps()}},
\code{\link{checker}},
-\code{\link{new_checker}()}
+\code{\link[=new_checker]{new_checker()}}
}
\concept{checks}
diff --git a/man/check_rev_deps.Rd b/man/check_rev_deps.Rd
index 99041ef..0471ad3 100644
--- a/man/check_rev_deps.Rd
+++ b/man/check_rev_deps.Rd
@@ -61,10 +61,10 @@ installed from local source. Both \verb{R CMD checks} are later compared to
identify changes in reverse dependency behaviors.
}
\seealso{
-Other checks:
+Other checks:
\code{\link{STATUS}},
-\code{\link{check_pkgs}()},
+\code{\link[=check_pkgs]{check_pkgs()}},
\code{\link{checker}},
-\code{\link{new_checker}()}
+\code{\link[=new_checker]{new_checker()}}
}
\concept{checks}
diff --git a/man/check_task.Rd b/man/check_task.Rd
index 420d96c..d2ad2e7 100644
--- a/man/check_task.Rd
+++ b/man/check_task.Rd
@@ -25,7 +25,7 @@ Windows.)}
set in the check process.}
\item{...}{
- Arguments passed on to \code{\link[=task]{task}}
+ Arguments passed on to \code{\link{task}}
\describe{
\item{\code{.subclass}}{Additional subclasses.}
}}
@@ -34,9 +34,9 @@ set in the check process.}
Create a task to run \verb{R CMD check}
}
\seealso{
-Other tasks:
-\code{\link{install_task}()},
-\code{\link{meta_task}()},
-\code{\link{task}()}
+Other tasks:
+\code{\link[=install_task]{install_task()}},
+\code{\link[=meta_task]{meta_task()}},
+\code{\link[=task]{task()}}
}
\concept{tasks}
diff --git a/man/checked-package.Rd b/man/checked-package.Rd
index 033a5c5..bbf8f75 100644
--- a/man/checked-package.Rd
+++ b/man/checked-package.Rd
@@ -22,6 +22,7 @@ Useful links:
Authors:
\itemize{
+ \item Szymon Maksymiuk \email{sz.maksymiuk@gmail.com} (\href{https://orcid.org/0000-0002-3120-1601}{ORCID})
\item Doug Kelkhoff \email{doug.kelkhoff@gmail.com} (\href{https://orcid.org/0009-0003-7845-4061}{ORCID})
}
diff --git a/man/checker.Rd b/man/checker.Rd
index 10116f2..d88f0a6 100644
--- a/man/checker.Rd
+++ b/man/checker.Rd
@@ -28,54 +28,55 @@ while (!orchestrator$is_done()) {
}
\seealso{
-Other checks:
+Other checks:
\code{\link{STATUS}},
-\code{\link{check_pkgs}()},
-\code{\link{check_rev_deps}()},
-\code{\link{new_checker}()}
+\code{\link[=check_pkgs]{check_pkgs()}},
+\code{\link[=check_rev_deps]{check_rev_deps()}},
+\code{\link[=new_checker]{new_checker()}}
}
\concept{checks}
\section{Public fields}{
-\if{html}{\out{}}
-\describe{
-\item{\code{graph}}{(\code{igraph::igraph()})\cr
+ \if{html}{\out{
}}
+ \describe{
+ \item{\code{graph}}{(\code{igraph::igraph()})\cr
A dependency graph, storing information about which dependencies
are required prior to execution of each check task.
Created with \code{\link[=task_graph]{task_graph()}}}
-\item{\code{plan}}{(\code{data.frame()})\cr
+ \item{\code{plan}}{(\code{data.frame()})\cr
Checks task \code{data.frame} which is the source of all the checks.}
-\item{\code{output}}{(\code{character(1)})\cr
+ \item{\code{output}}{(\code{character(1)})\cr
Output directory where raw results and temporary library will
be created and stored.}
-}
-\if{html}{\out{
}}
+ }
+ \if{html}{\out{
}}
-\if{html}{\out{}}
-\if{latex}{\out{\hypertarget{method-checker-new}{}}}
-\subsection{Method \code{new()}}{
-Initialize a new check design
+\if{html}{\out{}}
+\if{latex}{\out{\hypertarget{method-checker-initialize}{}}}
+\subsection{\code{checker$new()}}{
+ Initialize a new check design
Use checks data.frame to generate task graph in which all dependencies
and installation order are embedded.
-\subsection{Usage}{
-\if{html}{\out{}}\preformatted{checker$new(
+ \subsection{Usage}{
+ \if{html}{\out{
}}
+ \preformatted{checker$new(
plan,
n = 2L,
output = file.path(tempdir(), paste(packageName(), Sys.Date(), sep = "-")),
@@ -85,145 +86,154 @@ and installation order are embedded.
dependencies = TRUE,
upgrade = FALSE,
...
-)}\if{html}{\out{
}}
-}
-
-\subsection{Arguments}{
-\if{html}{\out{
}}
-\describe{
-\item{\code{plan}}{\code{plan} \code{data.frame}.}
-
-\item{\code{n}}{\code{integer} value indicating maximum number of subprocesses that
+)}
+ \if{html}{\out{
}}
+ }
+ \subsection{Arguments}{
+ \if{html}{\out{
}}
+ \describe{
+ \item{\code{plan}}{\code{plan} \code{data.frame}.}
+ \item{\code{n}}{\code{integer} value indicating maximum number of subprocesses that
can be simultaneously spawned when executing tasks.}
-
-\item{\code{output}}{\code{character} value specifying path where the output should
+ \item{\code{output}}{\code{character} value specifying path where the output should
be stored.}
-
-\item{\code{lib.loc}}{\code{character} vector with libraries allowed to be used when
+ \item{\code{lib.loc}}{\code{character} vector with libraries allowed to be used when
checking packages, defaults to entire .libPaths().}
-
-\item{\code{repos}}{\code{character} vector of repositories which will be used when
+ \item{\code{repos}}{\code{character} vector of repositories which will be used when
generating task graph and later pulling dependencies.}
-
-\item{\code{restore}}{\code{logical} value, whether output directory should be
+ \item{\code{restore}}{\code{logical} value, whether output directory should be
unlinked before running checks. If \code{FALSE}, an attempt will me made to
restore previous progress from the same \code{output}.}
-
-\item{\code{dependencies}}{A vector of length one or a named list.
+ \item{\code{dependencies}}{A vector of length one or a named list.
Compatible with \code{\link{as_pkg_dependencies}}.}
-
-\item{\code{upgrade}}{\code{logical} value, whether packages should be upgraded
+ \item{\code{upgrade}}{\code{logical} value, whether packages should be upgraded
if more recent version is discovered in available sources. Remotes
packages, if allowed to be used, are always installed and prioritized.}
-
-\item{\code{...}}{Additional arguments unused}
-}
-\if{html}{\out{
}}
-}
-\subsection{Returns}{
-\link{checker}.
-}
+ \item{\code{...}}{Additional arguments unused}
+ }
+ \if{html}{\out{
}}
\if{html}{\out{}}
\if{latex}{\out{\hypertarget{method-checker-active_processes}{}}}
-\subsection{Method \code{active_processes()}}{
-Get Active Processes list
-\subsection{Usage}{
-\if{html}{\out{}}\preformatted{checker$active_processes()}\if{html}{\out{
}}
+\subsection{\code{checker$active_processes()}}{
+ Get Active Processes list
+ \subsection{Usage}{
+ \if{html}{\out{}}
+ \preformatted{checker$active_processes()}
+ \if{html}{\out{
}}
+ }
}
-}
\if{html}{\out{
}}
\if{html}{\out{}}
\if{latex}{\out{\hypertarget{method-checker-failed_tasks}{}}}
-\subsection{Method \code{failed_tasks()}}{
-Get Failed Tasks list
-\subsection{Usage}{
-\if{html}{\out{}}\preformatted{checker$failed_tasks()}\if{html}{\out{
}}
+\subsection{\code{checker$failed_tasks()}}{
+ Get Failed Tasks list
+ \subsection{Usage}{
+ \if{html}{\out{}}
+ \preformatted{checker$failed_tasks()}
+ \if{html}{\out{
}}
+ }
}
-}
\if{html}{\out{
}}
\if{html}{\out{}}
\if{latex}{\out{\hypertarget{method-checker-terminate}{}}}
-\subsection{Method \code{terminate()}}{
-Kill All Active Design Processes
+\subsection{\code{checker$terminate()}}{
+ Kill All Active Design Processes
Immediately terminates all the active processes.
-\subsection{Usage}{
-\if{html}{\out{}}\preformatted{checker$terminate()}\if{html}{\out{
}}
+ \subsection{Usage}{
+ \if{html}{\out{}}
+ \preformatted{checker$terminate()}
+ \if{html}{\out{
}}
+ }
}
-}
\if{html}{\out{
}}
\if{html}{\out{}}
\if{latex}{\out{\hypertarget{method-checker-step}{}}}
-\subsection{Method \code{step()}}{
-Fill Available Processes with Tasks
-\subsection{Usage}{
-\if{html}{\out{}}\preformatted{checker$step()}\if{html}{\out{
}}
-}
-
-\subsection{Returns}{
-A logical value, indicating whether processes are actively
+\subsection{\code{checker$step()}}{
+ Fill Available Processes with Tasks
+ \subsection{Usage}{
+ \if{html}{\out{}}
+ \preformatted{checker$step()}
+ \if{html}{\out{
}}
+ }
+ \subsection{Returns}{
+ A logical value, indicating whether processes are actively
running.
+ }
}
-}
+
\if{html}{\out{
}}
\if{html}{\out{}}
\if{latex}{\out{\hypertarget{method-checker-start_next_task}{}}}
-\subsection{Method \code{start_next_task()}}{
-Start Next Task
-\subsection{Usage}{
-\if{html}{\out{}}\preformatted{checker$start_next_task()}\if{html}{\out{
}}
-}
-
-\subsection{Returns}{
-A integer value, coercible to logical to indicate whether a new
+\subsection{\code{checker$start_next_task()}}{
+ Start Next Task
+ \subsection{Usage}{
+ \if{html}{\out{}}
+ \preformatted{checker$start_next_task()}
+ \if{html}{\out{
}}
+ }
+ \subsection{Returns}{
+ A integer value, coercible to logical to indicate whether a new
process was spawned, or \code{-1} if all tasks have finished.
+ }
}
-}
+
\if{html}{\out{
}}
\if{html}{\out{}}
\if{latex}{\out{\hypertarget{method-checker-is_done}{}}}
-\subsection{Method \code{is_done()}}{
-Check if checks are done
+\subsection{\code{checker$is_done()}}{
+ Check if checks are done
Checks whether all the scheduled tasks were successfully executed.
-\subsection{Usage}{
-\if{html}{\out{}}\preformatted{checker$is_done()}\if{html}{\out{
}}
+ \subsection{Usage}{
+ \if{html}{\out{}}
+ \preformatted{checker$is_done()}
+ \if{html}{\out{
}}
+ }
}
-}
\if{html}{\out{
}}
\if{html}{\out{}}
\if{latex}{\out{\hypertarget{method-checker-tasks}{}}}
-\subsection{Method \code{tasks()}}{
-Tasks
+\subsection{\code{checker$tasks()}}{
+ Tasks
Returns what type of tasks the checker consists of and returns a unique
vector of primary classes
-\subsection{Usage}{
-\if{html}{\out{}}\preformatted{checker$tasks()}\if{html}{\out{
}}
+ \subsection{Usage}{
+ \if{html}{\out{}}
+ \preformatted{checker$tasks()}
+ \if{html}{\out{
}}
+ }
}
-}
\if{html}{\out{
}}
\if{html}{\out{}}
\if{latex}{\out{\hypertarget{method-checker-clone}{}}}
-\subsection{Method \code{clone()}}{
-The objects of this class are cloneable with this method.
-\subsection{Usage}{
-\if{html}{\out{}}\preformatted{checker$clone(deep = FALSE)}\if{html}{\out{
}}
+\subsection{\code{checker$clone()}}{
+ The objects of this class are cloneable with this method.
+ \subsection{Usage}{
+ \if{html}{\out{}}
+ \preformatted{checker$clone(deep = FALSE)}
+ \if{html}{\out{
}}
+ }
+ \subsection{Arguments}{
+ \if{html}{\out{}}
+ \describe{
+ \item{\code{deep}}{Whether to make a deep clone.}
+ }
+ \if{html}{\out{
}}
+ }
}
-\subsection{Arguments}{
-\if{html}{\out{}}
-\describe{
-\item{\code{deep}}{Whether to make a deep clone.}
-}
-\if{html}{\out{
}}
-}
-}
}
diff --git a/man/fmt.Rd b/man/fmt.Rd
index 8413048..dd3ce63 100644
--- a/man/fmt.Rd
+++ b/man/fmt.Rd
@@ -22,5 +22,20 @@ fmt(..., g, nodes, task = NULL, .envir = parent.frame(), ansi = TRUE)
\description{
Provided a task, allows for use of a handful of shorthand symbols which will
use the task as a context for formatting task fields.
+}
+\examples{
+task <- install_task(origin = pkg_origin(
+ package = "pkg",
+ version = package_version("1.2.3"),
+ source = system.file(
+ "example_packages",
+ "exampleGood",
+ package = "checked"
+ )
+))
+
+# Examples for unexported functions are not supported
+# fmt(task = task, "{action} {package} ({version}) from {source}")
+
}
\keyword{internal}
diff --git a/man/install_task.Rd b/man/install_task.Rd
index 385aa3e..6102e4c 100644
--- a/man/install_task.Rd
+++ b/man/install_task.Rd
@@ -38,7 +38,8 @@ path.}
\item{...}{
further arguments to be passed to \code{\link[utils]{download.file}},
- \code{\link[utils]{available.packages}}, or to the functions for binary
+ \code{\link[utils]{available.packages}}, or to
+ the functions for binary
installs on macOS and Windows (which accept an argument \code{"lock"}:
see the section on \sQuote{Locking}).
}
@@ -47,9 +48,9 @@ path.}
Create a task to install a package and dependencies
}
\seealso{
-Other tasks:
-\code{\link{check_task}()},
-\code{\link{meta_task}()},
-\code{\link{task}()}
+Other tasks:
+\code{\link[=check_task]{check_task()}},
+\code{\link[=meta_task]{meta_task()}},
+\code{\link[=task]{task()}}
}
\concept{tasks}
diff --git a/man/lib_path.Rd b/man/lib_path.Rd
index 0d5ddbb..3f0933a 100644
--- a/man/lib_path.Rd
+++ b/man/lib_path.Rd
@@ -26,7 +26,7 @@ lib_path method creates default path handlers for given pkg origin while
lib_path_x creates an actual object.
}
\seealso{
-Other specs:
-\code{\link{pkg_origin}()}
+Other specs:
+\code{\link[=pkg_origin]{pkg_origin()}}
}
\concept{specs}
diff --git a/man/meta_task.Rd b/man/meta_task.Rd
index 0662a62..a665435 100644
--- a/man/meta_task.Rd
+++ b/man/meta_task.Rd
@@ -17,9 +17,9 @@ Meta tasks are tasks which are not intended to perform computation. They
exist simply to provide relationships among computational tasks.
}
\seealso{
-Other tasks:
-\code{\link{check_task}()},
-\code{\link{install_task}()},
-\code{\link{task}()}
+Other tasks:
+\code{\link[=check_task]{check_task()}},
+\code{\link[=install_task]{install_task()}},
+\code{\link[=task]{task()}}
}
\concept{tasks}
diff --git a/man/new_checker.Rd b/man/new_checker.Rd
index d97f270..390651f 100644
--- a/man/new_checker.Rd
+++ b/man/new_checker.Rd
@@ -18,16 +18,10 @@ new_rev_dep_checker(x, ...)
Instantiate a check design from a path or directory.
}
\seealso{
-Other checks:
+Other checks:
\code{\link{STATUS}},
-\code{\link{check_pkgs}()},
-\code{\link{check_rev_deps}()},
-\code{\link{checker}}
-
-Other checks:
-\code{\link{STATUS}},
-\code{\link{check_pkgs}()},
-\code{\link{check_rev_deps}()},
+\code{\link[=check_pkgs]{check_pkgs()}},
+\code{\link[=check_rev_deps]{check_rev_deps()}},
\code{\link{checker}}
}
\concept{checks}
diff --git a/man/options.Rd b/man/options.Rd
index 34780cc..eb67337 100644
--- a/man/options.Rd
+++ b/man/options.Rd
@@ -128,13 +128,20 @@ should be inherited by the install subprocesses, from the main process\item{defa
\item{envvar: }{R_CHECKED_INSTALL_OPTS_TO_INHERIT (evaluated if possible, raw string otherwise)}
}}
+\item{install_cmdargs}{\describe{
+\code{character} vector of args passed to the separate R package installation
+process.\item{default: }{\preformatted{c("--slave", "--no-save", "--no-restore")}}
+\item{option: }{checked.install_cmdargs}
+\item{envvar: }{R_CHECKED_INSTALL_CMDARGS (evaluated if possible, raw string otherwise)}
+}}
+
}
}
\seealso{
options getOption Sys.setenv Sys.getenv
-Other documentation:
+Other documentation:
\code{\link{options_params}}
}
\concept{documentation}
diff --git a/man/options_params.Rd b/man/options_params.Rd
index 963eb30..45ec1cb 100644
--- a/man/options_params.Rd
+++ b/man/options_params.Rd
@@ -11,6 +11,9 @@ is recommended to be used for designs with many sub-processes required as
native garbage collection can lag leading to memory issues. Disable only
when maximum prefromance is required and memory is not the issue. (Defaults to \code{TRUE}, overwritable using option 'checked.proactive_gc' or environment variable 'R_CHECKED_PROACTIVE_GC')}
+\item{install_cmdargs}{\code{character} vector of args passed to the separate R package installation
+process. (Defaults to \code{c("--slave", "--no-save", "--no-restore")}, overwritable using option 'checked.install_cmdargs' or environment variable 'R_CHECKED_INSTALL_CMDARGS')}
+
\item{results_error_on}{character vector indicating whether R error should be thrown when issues
are discovered when generating results. "never" means that no errors
are thrown. If "issues" then errors are emitted only on issues, whereas
@@ -57,7 +60,7 @@ if correct values could not be acquired with system('tput lines') (Defaults to \
Checked Options
}
\seealso{
-Other documentation:
-\code{\link{options}()}
+Other documentation:
+\code{\link{options}}
}
\concept{documentation}
diff --git a/man/pkg_origin.Rd b/man/pkg_origin.Rd
index db1a53e..508ccf5 100644
--- a/man/pkg_origin.Rd
+++ b/man/pkg_origin.Rd
@@ -44,7 +44,7 @@ Create package specification list which consists of all the details required
to identify and acquire source of the package.
}
\seealso{
-Other specs:
-\code{\link{lib_path}()}
+Other specs:
+\code{\link[=lib_path]{lib_path()}}
}
\concept{specs}
diff --git a/man/plan_local_checks.Rd b/man/plan_local_checks.Rd
index 6916c83..e0d3c25 100644
--- a/man/plan_local_checks.Rd
+++ b/man/plan_local_checks.Rd
@@ -34,8 +34,8 @@ the source.
}
}
\seealso{
-Other plan:
-\code{\link{plan_local_install}()},
-\code{\link{plan_rev_dep_checks}()}
+Other plan:
+\code{\link[=plan_local_install]{plan_local_install()}},
+\code{\link[=plan_rev_dep_checks]{plan_rev_dep_checks()}}
}
\concept{plan}
diff --git a/man/plan_local_install.Rd b/man/plan_local_install.Rd
index aed52d5..b5db01e 100644
--- a/man/plan_local_install.Rd
+++ b/man/plan_local_install.Rd
@@ -27,8 +27,8 @@ Check \code{\link[utils:install.packages]{utils::install.packages}} for details.
Generates a plan for running installing a package from source.
}
\seealso{
-Other plan:
-\code{\link{plan_local_checks}()},
-\code{\link{plan_rev_dep_checks}()}
+Other plan:
+\code{\link[=plan_local_checks]{plan_local_checks()}},
+\code{\link[=plan_rev_dep_checks]{plan_rev_dep_checks()}}
}
\concept{plan}
diff --git a/man/plan_rev_dep_checks.Rd b/man/plan_rev_dep_checks.Rd
index 9708ecb..112376a 100644
--- a/man/plan_rev_dep_checks.Rd
+++ b/man/plan_rev_dep_checks.Rd
@@ -26,8 +26,8 @@ path to the development version of the package and \code{repos} should be a
repository for which reverse dependencies should be identified.
}
\seealso{
-Other plan:
-\code{\link{plan_local_checks}()},
-\code{\link{plan_local_install}()}
+Other plan:
+\code{\link[=plan_local_checks]{plan_local_checks()}},
+\code{\link[=plan_local_install]{plan_local_install()}}
}
\concept{plan}
diff --git a/man/print.checked_results.Rd b/man/print.checked_results.Rd
index bea9075..7664b94 100644
--- a/man/print.checked_results.Rd
+++ b/man/print.checked_results.Rd
@@ -28,8 +28,8 @@ packages with both "issues" and "potential_issues". (Defaults to \code{"all"}, o
Print checked results
}
\seealso{
-Other results:
-\code{\link{results}()},
-\code{\link{results_to_df}()}
+Other results:
+\code{\link[=results]{results()}},
+\code{\link[=results_to_df]{results_to_df()}}
}
\concept{results}
diff --git a/man/results.Rd b/man/results.Rd
index 90621d8..b34b28f 100644
--- a/man/results.Rd
+++ b/man/results.Rd
@@ -40,8 +40,8 @@ are thrown. If "issues" then errors are emitted only on issues, whereas
Get R CMD check results
}
\seealso{
-Other results:
-\code{\link{print.checked_results}()},
-\code{\link{results_to_df}()}
+Other results:
+\code{\link[=print.checked_results]{print.checked_results()}},
+\code{\link[=results_to_df]{results_to_df()}}
}
\concept{results}
diff --git a/man/results_to_df.Rd b/man/results_to_df.Rd
index b04a1ee..e998e3d 100644
--- a/man/results_to_df.Rd
+++ b/man/results_to_df.Rd
@@ -17,8 +17,8 @@ Such form makes quick results analysis easier by providing a general overview
of identified failures.
}
\seealso{
-Other results:
-\code{\link{print.checked_results}()},
-\code{\link{results}()}
+Other results:
+\code{\link[=print.checked_results]{print.checked_results()}},
+\code{\link[=results]{results()}}
}
\concept{results}
diff --git a/man/task.Rd b/man/task.Rd
index 564921a..00f39df 100644
--- a/man/task.Rd
+++ b/man/task.Rd
@@ -20,9 +20,9 @@ Tasks can be nested, representing either a singular task, or a set of
related tasks.
}
\seealso{
-Other tasks:
-\code{\link{check_task}()},
-\code{\link{install_task}()},
-\code{\link{meta_task}()}
+Other tasks:
+\code{\link[=check_task]{check_task()}},
+\code{\link[=install_task]{install_task()}},
+\code{\link[=meta_task]{meta_task()}}
}
\concept{tasks}