From bc6f5f725127b95004bc28667fbb1dc32e5e4593 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 21 Jul 2026 10:24:33 +0000 Subject: [PATCH 1/2] Bump actions/setup-python from 5 to 7 Bumps [actions/setup-python](https://github.com/actions/setup-python) from 5 to 7. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](https://github.com/actions/setup-python/compare/v5...v7) --- updated-dependencies: - dependency-name: actions/setup-python dependency-version: '7' dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] --- .github/workflows/lint_sqlfluff.yml | 2 +- .github/workflows/regenerate_dialects.yml | 2 +- .github/workflows/sql_syntax_check.yml | 2 +- .github/workflows/transpile.yml | 4 ++-- 4 files changed, 5 insertions(+), 5 deletions(-) diff --git a/.github/workflows/lint_sqlfluff.yml b/.github/workflows/lint_sqlfluff.yml index 9401198e..0986785b 100644 --- a/.github/workflows/lint_sqlfluff.yml +++ b/.github/workflows/lint_sqlfluff.yml @@ -13,7 +13,7 @@ jobs: # Full history so we can diff the PR branch against its base fetch-depth: 0 - name: Install Python - uses: actions/setup-python@v5 + uses: actions/setup-python@v7 with: python-version: "3.12" - name: install sqlfluff diff --git a/.github/workflows/regenerate_dialects.yml b/.github/workflows/regenerate_dialects.yml index a686f607..e8d0e9ea 100644 --- a/.github/workflows/regenerate_dialects.yml +++ b/.github/workflows/regenerate_dialects.yml @@ -27,7 +27,7 @@ jobs: with: token: ${{ steps.app-token.outputs.token }} - - uses: actions/setup-python@v5 + - uses: actions/setup-python@v7 with: python-version: "3.12" diff --git a/.github/workflows/sql_syntax_check.yml b/.github/workflows/sql_syntax_check.yml index b673df23..5af0f545 100644 --- a/.github/workflows/sql_syntax_check.yml +++ b/.github/workflows/sql_syntax_check.yml @@ -16,7 +16,7 @@ jobs: runs-on: ubuntu-latest steps: - uses: actions/checkout@v7 - - uses: actions/setup-python@v5 + - uses: actions/setup-python@v7 with: python-version: "3.12" - name: Install locked dependencies diff --git a/.github/workflows/transpile.yml b/.github/workflows/transpile.yml index 62ed3ae3..4d75074e 100644 --- a/.github/workflows/transpile.yml +++ b/.github/workflows/transpile.yml @@ -10,7 +10,7 @@ jobs: runs-on: ubuntu-latest steps: - uses: actions/checkout@v7 - - uses: actions/setup-python@v5 + - uses: actions/setup-python@v7 with: python-version: "3.10" - name: Install locked dependencies @@ -28,7 +28,7 @@ jobs: checks: write steps: - uses: actions/checkout@v7 - - uses: actions/setup-python@v5 + - uses: actions/setup-python@v7 with: python-version: "3.12" - name: Install locked dependencies From 2be3d0156376f03390ef816b4eee4d42c673cf68 Mon Sep 17 00:00:00 2001 From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com> Date: Sat, 25 Jul 2026 18:17:12 +0000 Subject: [PATCH 2/2] Fix D/C\'d string escaping in neuroblock_dose.sql source and converted files --- mimic-iii/concepts/durations/neuroblock_dose.sql | 4 ++-- mimic-iii/concepts_duckdb/durations/neuroblock_dose.sql | 4 ++-- mimic-iii/concepts_postgres/durations/neuroblock_dose.sql | 4 ++-- 3 files changed, 6 insertions(+), 6 deletions(-) diff --git a/mimic-iii/concepts/durations/neuroblock_dose.sql b/mimic-iii/concepts/durations/neuroblock_dose.sql index 098b557e..a5ec92c5 100644 --- a/mimic-iii/concepts/durations/neuroblock_dose.sql +++ b/mimic-iii/concepts/durations/neuroblock_dose.sql @@ -28,7 +28,7 @@ with drugmv as , 1 as drug -- the 'stopped' column indicates if a drug has been disconnected - , max(case when stopped in ('Stopped','D/C''d') then 1 else 0 end) as drug_stopped + , max(case when stopped in ('Stopped','D/C\'d') then 1 else 0 end) as drug_stopped -- we only include continuous infusions, therefore expect a rate , max(case @@ -68,7 +68,7 @@ with drugmv as , 1 as drug -- the 'stopped' column indicates if a drug has been disconnected - , max(case when stopped in ('Stopped','D/C''d') then 1 else 0 end) as drug_stopped + , max(case when stopped in ('Stopped','D/C\'d') then 1 else 0 end) as drug_stopped , max(case when valuenum <= 10 then 0 else 1 end) as drug_null -- educated guess! diff --git a/mimic-iii/concepts_duckdb/durations/neuroblock_dose.sql b/mimic-iii/concepts_duckdb/durations/neuroblock_dose.sql index afb2544e..0fd22d15 100644 --- a/mimic-iii/concepts_duckdb/durations/neuroblock_dose.sql +++ b/mimic-iii/concepts_duckdb/durations/neuroblock_dose.sql @@ -18,7 +18,7 @@ WITH drugmv AS ( icustay_id, charttime, 1 AS drug, - MAX(CASE WHEN stopped IN ('Stopped', 'D/C' || 'd') THEN 1 ELSE 0 END) AS drug_stopped, + MAX(CASE WHEN stopped IN ('Stopped', 'D/C''d') THEN 1 ELSE 0 END) AS drug_stopped, MAX( CASE WHEN itemid >= 40000 AND NOT amount IS NULL @@ -55,7 +55,7 @@ WITH drugmv AS ( icustay_id, charttime, 1 AS drug, - MAX(CASE WHEN stopped IN ('Stopped', 'D/C' || 'd') THEN 1 ELSE 0 END) AS drug_stopped, + MAX(CASE WHEN stopped IN ('Stopped', 'D/C''d') THEN 1 ELSE 0 END) AS drug_stopped, MAX(CASE WHEN valuenum <= 10 THEN 0 ELSE 1 END) AS drug_null, MAX(CASE WHEN valuenum <= 10 THEN valuenum ELSE NULL END) AS drug_rate, MAX(CASE WHEN valuenum > 10 THEN valuenum ELSE NULL END) AS drug_amount diff --git a/mimic-iii/concepts_postgres/durations/neuroblock_dose.sql b/mimic-iii/concepts_postgres/durations/neuroblock_dose.sql index 2dd2a5de..5da41afa 100644 --- a/mimic-iii/concepts_postgres/durations/neuroblock_dose.sql +++ b/mimic-iii/concepts_postgres/durations/neuroblock_dose.sql @@ -22,7 +22,7 @@ WITH drugmv AS ( icustay_id, charttime, /* where clause below ensures all rows are instance of the drug */ 1 AS drug, /* the 'stopped' column indicates if a drug has been disconnected */ - MAX(CASE WHEN stopped IN ('Stopped', 'D/C' || 'd') THEN 1 ELSE 0 END) AS drug_stopped, /* we only include continuous infusions, therefore expect a rate */ + MAX(CASE WHEN stopped IN ('Stopped', 'D/C''d') THEN 1 ELSE 0 END) AS drug_stopped, /* we only include continuous infusions, therefore expect a rate */ MAX( CASE WHEN itemid >= 40000 AND NOT amount IS NULL @@ -60,7 +60,7 @@ WITH drugmv AS ( icustay_id, charttime, /* where clause below ensures all rows are instance of the drug */ 1 AS drug, /* the 'stopped' column indicates if a drug has been disconnected */ - MAX(CASE WHEN stopped IN ('Stopped', 'D/C' || 'd') THEN 1 ELSE 0 END) AS drug_stopped, + MAX(CASE WHEN stopped IN ('Stopped', 'D/C''d') THEN 1 ELSE 0 END) AS drug_stopped, MAX(CASE WHEN valuenum <= 10 THEN 0 ELSE 1 END) AS drug_null, /* educated guess! */ MAX(CASE WHEN valuenum <= 10 THEN valuenum ELSE NULL END) AS drug_rate, MAX(CASE WHEN valuenum > 10 THEN valuenum ELSE NULL END) AS drug_amount