chore: Bump @metamask/permission-controller to ^13.0.0

[FrederikBolding]

Bump permission-controller to the latest version and resolve most breaking changes. Dealing with the removal of PermittedHandlerExport is a larger refactor, that we will solve in follow-up PRs, thus we copy the type into snaps-rpc-methods temporarily.

---

Note

Medium Risk
Upgrades a core permissions dependency and adjusts middleware/type integration points; runtime behavior should be mostly unchanged but mismatches with the new permission-controller APIs could break permission enforcement or simulations.

Overview
Updates multiple packages to use @metamask/permission-controller@^13.0.0 and refreshes the lockfile accordingly.

Adapts to breaking API changes by switching snaps-simulation to the new top-level createPermissionMiddleware helper and tightening the return type of getPermissionSpecifications.

To avoid a larger refactor from the upstream removal of PermittedHandlerExport, snaps-rpc-methods temporarily vendors that type in src/types.ts and rewires permitted-method handlers to import it locally instead of from permission-controller.

^{Reviewed by Cursor Bugbot for commit 1775e8b. Bugbot is set up for automated code reviews on this repo. Configure here.}

[socket-security]

Review the following changes in direct dependencies. Learn more about Socket for GitHub.

Diff	Package	Supply Chain Security	Vulnerability	Quality	Maintenance	License
	@​metamask/​permission-controller@​13.0.0

View full report

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 98.56%. Comparing base (aab4a4e) to head (1775e8b).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main    #3984   +/-   ##
=======================================
  Coverage   98.56%   98.56%           
=======================================
  Files         429      429           
  Lines       12365    12365           
  Branches     1944     1944           
=======================================
  Hits        12187    12187           
  Misses        178      178           

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.
• 📦 JS Bundle Analysis: Save yourself from yourself by tracking and limiting bundle sizes in JS merges.