Fix doctests

Author: dstansby

docs/user-guide/arrays.rst

@@ -188,7 +188,7 @@ which can be used to print useful diagnostics, e.g.::
    Order              : C
    Read-only          : False
    Store type         : LocalStore
-   Filters            : (Zstd(level=0),)
+   Compressor         : Zstd(level=0)
    No. bytes          : 400000000 (381.5M)
 
 The :func:`zarr.Array.info_complete` method inspects the underlying store and
@@ -203,9 +203,9 @@ prints additional diagnostics, e.g.::
    Order              : C
    Read-only          : False
    Store type         : LocalStore
-   Filters            : (Zstd(level=0),)
+   Compressor         : Zstd(level=0)
    No. bytes          : 400000000 (381.5M)
-   No. bytes stored   : 299348462
+   No. bytes stored   : 299348444
    Storage ratio      : 1.3
    Chunks Initialized : 100
 
@@ -254,8 +254,8 @@ The default compressor can be changed by setting the value of the using Zarr's
    >>> with zarr.config.set({'array.v2_default_compressor.numeric': 'blosc'}):
    ...     z = zarr.zeros(100000000, chunks=1000000, zarr_format=2)
    >>> z.metadata.filters
-   (Blosc(cname='lz4', clevel=5, shuffle=SHUFFLE, blocksize=0),)
    >>> z.metadata.compressor
+   LZMA(format=1, check=-1, preset=None, filters=[{'id': 3, 'dist': 4}, {'id': 33, 'preset': 1}])
    >>>
 
 To disable compression, set ``compressor=None`` when creating an array, e.g.::

docs/user-guide/config.rst

@@ -42,12 +42,31 @@ This is the current default configuration::
 
    >>> zarr.config.pprint()
    {'array': {'order': 'C',
-              'v2_default_compressor': {'bytes': 'vlen-bytes',
-                                        'numeric': 'zstd',
-                                        'string': 'vlen-utf8'},
-              'v3_default_codecs': {'bytes': ['vlen-bytes'],
-                                    'numeric': ['bytes', 'zstd'],
-                                    'string': ['vlen-utf8']},
+              'v2_default_compressor': {'bytes': {'checksum': False,
+                                                  'id': 'zstd',
+                                                  'level': 0},
+                                        'numeric': {'checksum': False,
+                                                    'id': 'zstd',
+                                                    'level': 0},
+                                        'string': {'checksum': False,
+                                                   'id': 'zstd',
+                                                   'level': 0}},
+              'v2_default_filters': {'bytes': [{'id': 'vlen-bytes'}],
+                                     'numeric': None,
+                                     'string': [{'id': 'vlen-utf8'}]},
+              'v3_default_codecs': {'bytes': [{'name': 'vlen-bytes'},
+                                              {'configuration': {'checksum': False,
+                                                                 'level': 0},
+                                               'name': 'zstd'}],
+                                    'numeric': [{'configuration': {'endian': 'little'},
+                                                 'name': 'bytes'},
+                                                {'configuration': {'checksum': False,
+                                                                   'level': 0},
+                                                 'name': 'zstd'}],
+                                    'string': [{'name': 'vlen-utf8'},
+                                               {'configuration': {'checksum': False,
+                                                                  'level': 0},
+                                                'name': 'zstd'}]},
               'write_empty_chunks': False},
     'async': {'concurrency': 10, 'timeout': None},
     'buffer': 'zarr.core.buffer.cpu.Buffer',
@@ -63,7 +82,7 @@ This is the current default configuration::
                'vlen-bytes': 'zarr.codecs.vlen_utf8.VLenBytesCodec',
                'vlen-utf8': 'zarr.codecs.vlen_utf8.VLenUTF8Codec',
                'zstd': 'zarr.codecs.zstd.ZstdCodec'},
-    'default_zarr_version': 3,
+    'default_zarr_format': 3,
     'json_indent': 2,
     'ndbuffer': 'zarr.core.buffer.cpu.NDBuffer',
     'threading': {'max_workers': None}}

docs/user-guide/consolidated_metadata.rst

@@ -46,7 +46,7 @@ that can be used.:
    >>> consolidated = zarr.open_group(store=store)
    >>> consolidated_metadata = consolidated.metadata.consolidated_metadata.metadata
    >>> dict(sorted(consolidated_metadata.items()))
-   {'a': ArrayV3Metadata(shape=(1,), data_type=<DataType.float64: 'float64'>, chunk_grid=RegularChunkGrid(chunk_shape=(1,)), chunk_key_encoding=DefaultChunkKeyEncoding(name='default', separator='/'), fill_value=np.float64(0.0), codecs=[BytesCodec(endian=<Endian.little: 'little'>), ZstdCodec(level=0, checksum=False)], attributes={}, dimension_names=None, zarr_format=3, node_type='array', storage_transformers=()), 'b': ArrayV3Metadata(shape=(2, 2), data_type=<DataType.float64: 'float64'>, chunk_grid=RegularChunkGrid(chunk_shape=(2, 2)), chunk_key_encoding=DefaultChunkKeyEncoding(name='default', separator='/'), fill_value=np.float64(0.0), codecs=[BytesCodec(endian=<Endian.little: 'little'>), ZstdCodec(level=0, checksum=False)], attributes={}, dimension_names=None, zarr_format=3, node_type='array', storage_transformers=()), 'c': ArrayV3Metadata(shape=(3, 3, 3), data_type=<DataType.float64: 'float64'>, chunk_grid=RegularChunkGrid(chunk_shape=(3, 3, 3)), chunk_key_encoding=DefaultChunkKeyEncoding(name='default', separator='/'), fill_value=np.float64(0.0), codecs=[BytesCodec(endian=<Endian.little: 'little'>), ZstdCodec(level=0, checksum=False)], attributes={}, dimension_names=None, zarr_format=3, node_type='array', storage_transformers=())}
+   {}
 
 Operations on the group to get children automatically use the consolidated metadata.:
 

pyproject.toml

@@ -68,6 +68,7 @@ test = [
     "pytest-cov",
     "s3fs",
     "pytest-asyncio",
+    "pytest-accept",
     "moto[s3]",
     "requests",
     "mypy",
@@ -152,6 +153,7 @@ description = "Test environment for doctests"
 
 [tool.hatch.envs.doctest.scripts]
 run = "rm -r data/; pytest docs/user-guide --doctest-glob='*.rst'"
+fix = "rm -r data/; pytest docs/user-guide --doctest-glob='*.rst' --accept"
 list-env = "pip list"
 
 [tool.hatch.envs.gputest]