BioimageAnalysisCoreWEHI
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napari_lattice
napari_lattice PublicNapari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.
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QuPath_scripts
QuPath_scripts PublicA set of QuPath scripts for various pre-processing/analysis tasks
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jupyter_milton
jupyter_milton PublicRepo for notebooks and documents for jupyter to Milton job submission
Jupyter Notebook 1
Repositories
- export_multiplex_image_tiles Public
Nextflow pipeline for exporting tiles from very large COMET and OPAL images for segmentation and phenotyping
BioimageAnalysisCoreWEHI/export_multiplex_image_tiles’s past year of commit activity - export_qupath_measurements Public
Nextflow pipeline for exporting measurements from large images from qupath projects run in headless mode from CLI
BioimageAnalysisCoreWEHI/export_qupath_measurements’s past year of commit activity - napari_lattice Public
Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.
BioimageAnalysisCoreWEHI/napari_lattice’s past year of commit activity - extract_channel_images Public
Nextflow pipeline for extracting individual channel images from multiplex tiff images from COMET, MIBI and OPAL
BioimageAnalysisCoreWEHI/extract_channel_images’s past year of commit activity - sp_segment_cellsam_fork Public Forked from WEHI-SODA-Hub/sp_segment
Cell segmentation pipeline for spatial proteomics (COMET & MIBI).
BioimageAnalysisCoreWEHI/sp_segment_cellsam_fork’s past year of commit activity - lego_analysis Public
BioimageAnalysisCoreWEHI/lego_analysis’s past year of commit activity - Malaria_gametocyte_detection Public
Training a Yolo network to classify stages of malarial gametocyte development
BioimageAnalysisCoreWEHI/Malaria_gametocyte_detection’s past year of commit activity
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