Skip to content
@DataBiosphere

Data Biosphere

We are creating a vibrant ecosystem of interoperable modules and data environments for the biomedical community.

Popular repositories Loading

  1. toil toil Public

    A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).

    Python 925 244

  2. dsub dsub Public

    Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

    Python 275 47

  3. terra-ui terra-ui Public

    Web user interface for the Terra platform

    TypeScript 54 21

  4. leonardo leonardo Public

    Notebook service

    Scala 44 21

  5. terra-docker terra-docker Public

    Jupyter Notebook 32 33

  6. job-manager job-manager Public

    Job Manager API and UI for interacting with asynchronous batch jobs and workflows.

    TypeScript 27 5

Repositories

Showing 10 of 163 repositories
  • findable-ui Public
    DataBiosphere/findable-ui’s past year of commit activity
    TypeScript 1 Apache-2.0 0 62 8 Updated Dec 27, 2025
  • data-browser Public
    DataBiosphere/data-browser’s past year of commit activity
    Jupyter Notebook 11 Apache-2.0 5 105 13 Updated Dec 27, 2025
  • azul Public

    Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP

    DataBiosphere/azul’s past year of commit activity
    Python 9 Apache-2.0 3 669 13 Updated Dec 24, 2025
  • terra-policy-service Public
    DataBiosphere/terra-policy-service’s past year of commit activity
    Java 3 BSD-3-Clause 0 0 5 Updated Dec 23, 2025
  • terra-resource-buffer Public

    Terra Resource Buffering Service

    DataBiosphere/terra-resource-buffer’s past year of commit activity
    Java 4 BSD-3-Clause 2 0 2 Updated Dec 23, 2025
  • stairway Public

    Stairway saga transaction processor library

    DataBiosphere/stairway’s past year of commit activity
    Java 2 BSD-3-Clause 1 0 0 Updated Dec 23, 2025
  • dsub Public

    Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

    DataBiosphere/dsub’s past year of commit activity
    Python 275 Apache-2.0 47 75 3 Updated Dec 22, 2025
  • consent Public

    Broad Institute Data Use Oversight System

    DataBiosphere/consent’s past year of commit activity
    Java 11 BSD-3-Clause 2 0 3 Updated Dec 22, 2025
  • duos-ui Public

    Broad Institute Data Use Oversight System

    DataBiosphere/duos-ui’s past year of commit activity
    TypeScript 10 BSD-3-Clause 4 0 3 Updated Dec 22, 2025
  • terra-drs-hub Public
    DataBiosphere/terra-drs-hub’s past year of commit activity
    Java 3 BSD-3-Clause 0 0 1 Updated Dec 22, 2025
View all repositories