Chunk logic error/bug in `Component`.#210

Merged

The9Cat merged 236 commits intomainfrom

Mar 27, 2026

Commits on Nov 29, 2025

Preliminary implementation of subsample features in PotAccel and Cube to test a parallel output class to OutCoef called OutSample
Martin D. Weinberg
committed

Commits on Dec 1, 2025

Additional implementation errors fixed and added some documentation
Martin D. Weinberg
committed
Typo in call name
Martin D. Weinberg
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Merge branch 'devel' into OutSample
Martin D. Weinberg
committed
Refactoring into a single covariance class for simplicity
Martin D. Weinberg
committed

Commits on Dec 2, 2025

Added writeCoefCovariance for Cylindrical
Martin D. Weinberg
committed
Comment changes only
Martin D. Weinberg
committed
Comment changes only
Martin D. Weinberg
committed
Merge branch 'devel' into OutSample
Martin D. Weinberg
committed
Update src/Cube.cc

The9Cat
and
Copilot
authored
Initial plan
Copilot
committed
Initial plan
Copilot
committed
Update expui/Covariance.cc

The9Cat
and
Copilot
authored
Initial plan
Copilot
committed
Fix error message class name from CovarianceReader to SubsampleCovariance

Copilot
and
The9Cat
committed
Fix class name in error messages: CovarianceReader -> SubsampleCovariance

Copilot
and
The9Cat
committed
Fix additional class name references for consistency

Copilot
and
The9Cat
committed
Complete review checks

Copilot
and
The9Cat
committed
Complete class name consistency fixes

Copilot
and
The9Cat
committed
Merge pull request #178 from EXP-code/copilot/sub-pr-177
The9Cat
authored
Fix class name in error messages to SubsampleCovariance

Copilot
and
The9Cat
committed
Merge pull request #179 from EXP-code/copilot/sub-pr-177-again
The9Cat
authored
Complete feedback implementation

Copilot
and
The9Cat
committed
Merge pull request #180 from EXP-code/copilot/sub-pr-177-another-one
The9Cat
authored
Name stopping with OutCoef
Martin D. Weinberg
committed

Commits on Dec 3, 2025

Implemented CUDA version of subsampling but not tested
Martin D. Weinberg
committed
Reuse intermediate reduction variables
Martin D. Weinberg
committed
Add base-class overrides
Martin D. Weinberg
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Fix memory allocation for subsampling; allow user to set Cuda reduction method; swap z,y,x packing for the correct x,y,z packing
Martin D. Weinberg
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Add signature for updated coefficient storage; add base-class overrides
Martin D. Weinberg
committed
Save a small bit of time to zero rather than resize previously sized covariance elements
Martin D. Weinberg
committed
Make GPU indexing scheme consistent with CPU
Martin D. Weinberg
committed
Comment addition only [no CI]
Martin D. Weinberg
committed

Commits on Dec 4, 2025

Refactoring fix
Martin D. Weinberg
committed
Preliminary implementation of subsample support for Spherical and Cylinder
Martin D. Weinberg
committed
Remove debug output line
Martin D. Weinberg
committed
Fix debug routine for EL3's use of Eigen rather than Vector
Martin D. Weinberg
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Add missing methods needed for Covariance
Martin D. Weinberg
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Commits on Dec 5, 2025

Add a constructor from an explicit path+filename
Martin D. Weinberg
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Use the explicit path+filename constructor for Covariance
Martin D. Weinberg
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Fix OutSample logic
Martin D. Weinberg
committed
Add HDF5 compression to EmpCylSL disk cache files
Martin D. Weinberg
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Update exputil/EmpCylSL.cc

The9Cat
and
Copilot
authored
Update include/EmpCylSL.H

The9Cat
and
Copilot
authored
Initial plan
Copilot
committed
Add public setter for HDF5 compression parameters in EmpCylSL

Copilot
and
The9Cat
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Add validation for compression level in setH5Params

Copilot
and
The9Cat
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Add documentation for setH5Params method

Copilot
and
The9Cat
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Merge pull request #184 from EXP-code/copilot/sub-pr-183
The9Cat
authored
Allow the compression level to be user settable using the 'compress' YAML configuration parameter; I can't see why someone would want to turn this off, but it's an optin
Martin D. Weinberg
committed
Doc string updates only [no CI]
Martin D. Weinberg
committed

Commits on Dec 6, 2025

Update src/Cylinder.H

The9Cat
and
Copilot
authored

Commits on Dec 10, 2025

Version bump for devel after 7.9.0 release
Martin D. Weinberg
committed
Merge branch 'devel' into OutSample
Martin D. Weinberg
committed
Should be a project not system include here
Martin D. Weinberg
committed
Should be a project not system include here
Martin D. Weinberg
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To get the change for UnitValidator.H.
Martin D. Weinberg
committed

Commits on Dec 11, 2025

Commits on Dec 13, 2025

Updates for coefficient checking
Martin D. Weinberg
committed
Fix up after merging devel
Martin D. Weinberg
committed
Update expui/Coefficients.cc

The9Cat
and
Copilot
authored
Update expui/Coefficients.cc

The9Cat
and
Copilot
authored
Initial plan
Copilot
committed
Update expui/Coefficients.cc

The9Cat
and
Copilot
authored
Initial plan
Copilot
committed
Update expui/Coefficients.cc

The9Cat
and
Copilot
authored
Update expui/Coefficients.cc

The9Cat
and
Copilot
authored
Add empty coefs check to all CheckH5Params methods

Copilot
and
The9Cat
committed
Fix division by zero in scale comparison using absolute difference

Copilot
and
The9Cat
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Complete feedback implementation

Copilot
and
The9Cat
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Remove CodeQL artifact and add to gitignore

Copilot
and
The9Cat
committed
Merge pull request #196 from EXP-code/copilot/sub-pr-194-again
The9Cat
authored
Merge pull request #195 from EXP-code/copilot/sub-pr-194
The9Cat
authored
Fix some of the inconsistencies introduced by copilot
Martin D. Weinberg
committed

Commits on Dec 18, 2025

Added the totlCovar flag to the base class; accessible in the interface using the TotalCovar() member
Martin D. Weinberg
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Added the totlCovar and fullCovar parameters that set the base-class flags in initialize()
Martin D. Weinberg
committed
Allow the TotalCovar and FullCovar boolean flags control the writing of pooled or subsampled covariance
Martin D. Weinberg
committed
Update id string detection
Martin D. Weinberg
committed
Various updates for covariance control
Martin D. Weinberg
committed
White space changes and DEBUG isolation only
Martin D. Weinberg
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Clean up variable types for subsample reduction
Martin D. Weinberg
committed
Version bump
Martin D. Weinberg
committed

Commits on Dec 19, 2025

Preliminary implementation of new covariance return structures based on Eigen::Tensor
Martin D. Weinberg
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Correct the tensor conversion
Martin D. Weinberg
committed
Use slices when possible rather than element-by-element assignment
Martin D. Weinberg
committed
Added massT and countT support to SphericalBasis and Cylinder for Cuda subsampling
Martin D. Weinberg
committed

Commits on Dec 20, 2025

Added subsamp to valid key list
Martin D. Weinberg
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Fix countT logic for cuda implemenation
Martin D. Weinberg
committed
Separate pcaeof and pcavar cases
Martin D. Weinberg
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Only call pca_hall if configured
Martin D. Weinberg
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Only call pca_hall if configured
Martin D. Weinberg
committed
Clean up signature for cuda call
Martin D. Weinberg
committed
Fix subsamp logic
Martin D. Weinberg
committed
Add interactors for subsample covariance assignment
Martin D. Weinberg
committed
Fix a few typos
Martin D. Weinberg
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Fixed confusion between NMAX and NORDER in covariance packing
Martin D. Weinberg
committed

Commits on Dec 22, 2025

Use complex array for covariance in Cuda computation; update initialization logic for covar computation
Martin D. Weinberg
committed
Use complex array for covariance in Cuda computation; update initialization logic for covar computation
Martin D. Weinberg
committed
Comment only [No CI]
Martin D. Weinberg
committed
Rename id from 'Sphere SL' to 'SphereID'
Martin D. Weinberg
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Rename id from 'Sphere SL' to 'SphereID' and add make_covar()
Martin D. Weinberg
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Rename id from 'Sphere SL' to 'SphereID'
Martin D. Weinberg
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Add make_covar()
Martin D. Weinberg
committed
Separate covariance reduction from coefficient reduction to better handle multilevel accumulation
Martin D. Weinberg
committed
Use either pcavar or nint>0 to trigger covar computation
Martin D. Weinberg
committed

Commits on Dec 23, 2025

Used complex data types for covariance; fixed strided ordering
Martin D. Weinberg
committed
Compute full covariance for SphericalBasis in both CPU and GPU
Martin D. Weinberg
committed
Minor updates for full covariance
Martin D. Weinberg
committed

Commits on Dec 24, 2025

Removed some noisy deep debugging output
Martin D. Weinberg
committed

Commits on Dec 26, 2025

Covar updates for PolarBasis: CPU and GPU
Martin D. Weinberg
committed
Fixes for cuda implementation of covariance computation in PolarBasis.
Martin D. Weinberg
committed
Updated SubsampleCovariance to read FlatDisk
Martin D. Weinberg
committed
Assign default value for 'compute' in header
Martin D. Weinberg
committed
Add new valid keys
Martin D. Weinberg
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Remove variables already defined in PotAccel
Martin D. Weinberg
committed

Commits on Dec 28, 2025

Add missing write calls from covarStore
Martin D. Weinberg
committed
Apply suggestion from @Copilot

The9Cat
and
Copilot
authored
Apply suggestion from @Copilot

The9Cat
and
Copilot
authored
Minor cleaning
Martin D. Weinberg
committed
Merge branch 'coefExtendCheck' of github.com:EXP-code/EXP into coefExtendCheck
Martin D. Weinberg
committed
Update expui/Coefficients.cc

The9Cat
and
Copilot
authored
Update expui/Coefficients.cc

The9Cat
and
Copilot
authored
Update expui/Coefficients.cc

The9Cat
and
Copilot
authored
Update expui/Coefficients.cc

The9Cat
and
Copilot
authored
Update expui/Coefficients.cc

The9Cat
and
Copilot
authored

Commits on Jan 12, 2026

Some C++14/17 modernization
Martin D. Weinberg
committed

Commits on Feb 1, 2026

Implement restarting checkpoint directories in OutHDF5
Martin D. Weinberg
committed
Mistakenly misordered MPI reduction for OutHDF5 restart
Martin D. Weinberg
committed

Commits on Feb 3, 2026

Added asymptotic form of the spherical deprojection of the exponential disk as an option to EmpCylSL
Martin D. Weinberg
committed
Added a more exact spherical deprojection implementation
Martin D. Weinberg
committed
Add a cache check for spherical model type used in eof computation
Martin D. Weinberg
committed
Test routine for ExpDeproj class
Martin D. Weinberg
committed
Test routine for ExpDeproj class
Martin D. Weinberg
committed
Move deprojection flag parsing before EmpCylSL instantiation
Martin D. Weinberg
committed
Add an experimental bias factor for deprojected basis construction
Martin D. Weinberg
committed
Change from 'afac' to 'bias' to be a bit more descriptive
Martin D. Weinberg
committed
Remove stray character
Martin D. Weinberg
committed
Change defaults to ExpSphere in pyEXP
Martin D. Weinberg
committed

Commits on Feb 4, 2026

Commits on Feb 17, 2026

Commits on Feb 18, 2026

Commits on Feb 25, 2026

Remove the dependence on the reduced-memory Particle class sefined in Particle.h
Martin D. Weinberg
committed
Updates for user consistency
Martin D. Weinberg
committed
Added Doxygen docs for mtype
Martin D. Weinberg
committed
Added ppower key for setting power-law deprojection method in Cylinder
Martin D. Weinberg
committed
Merge branch 'SphericalExact' of github.com:EXP-code/EXP into SphericalExact
Martin D. Weinberg
committed
Initial plan
Copilot
committed
Fix thread-unsafe lazy initialization: move initialize() to constructor

Copilot
and
The9Cat
committed
Merge pull request #205 from EXP-code/copilot/sub-pr-199
The9Cat
authored
Initial plan
Copilot
committed
Initial plan
Copilot
committed
Update utils/ICs/check_coefs.cc

The9Cat
and
Copilot
authored
Add @param documentation for ppower in Cylinder.H

Copilot
and
The9Cat
committed
Update utils/ICs/check_coefs2.cc

The9Cat
and
Copilot
authored
Fix error message in check_coefs.cc to list all valid mtype options

Copilot
and
The9Cat
committed
Merge pull request #206 from EXP-code/copilot/sub-pr-199
The9Cat
authored
Merge pull request #207 from EXP-code/copilot/sub-pr-199-again
The9Cat
authored

Commits on Feb 26, 2026

Merge pull request #204 from EXP-code/NoReducedParticle
michael-petersen
authored

Commits on Mar 23, 2026

Merge pull request #199 from EXP-code/SphericalExact
michael-petersen
authored

Commits on Mar 25, 2026

Commits on Mar 27, 2026