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30 changes: 15 additions & 15 deletions src/semsql/builder/registry/ontologies.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -112,19 +112,19 @@ ontologies:
url: https://raw.githubusercontent.com/Data-Semantics-Laboratory/modular-ontology-design-library/master/MODL.owl
prefixmap:
modl: "https://archive.org/services/purl/purl/modular_ontology_design_library#"
phenio:
description: Monarch Phenomics Integrated Ontology
url: https://github.com/monarch-initiative/phenio/releases/latest/download/phenio.owl.gz
compression: gzip
relation_graph_settings:
properties:
- BFO:0000050
- BFO:0000051
- UPHENO:0000001
- UPHENO:0000003
- RO:0002202
prefixmap:
biolink: https://w3id.org/biolink/vocab/
#phenio:
# description: Monarch Phenomics Integrated Ontology
# url: https://github.com/monarch-initiative/phenio/releases/latest/download/phenio.owl.gz
# compression: gzip
# relation_graph_settings:
# properties:
# - BFO:0000050
# - BFO:0000051
# - UPHENO:0000001
# - UPHENO:0000003
# - RO:0002202
# prefixmap:
# biolink: https://w3id.org/biolink/vocab/
comploinc:
url: https://github.com/loinc/comp-loinc/releases/download/v2022-11-05/merged_reasoned_loinc.owl
build_command: "robot relax -i $< merge -o $@"
Expand All @@ -151,8 +151,8 @@ ontologies:
url: https://github.com/brain-bican/primate_brain_atlas_ontology/raw/main/pbao-base.owl
prefixmap:
PBA: https://purl.brain-bican.org/ontology/pbao/PBA_
bero:
url: https://github.com/berkeleybop/bero/releases/download/2022-05-26/bero.owl
# bero:
# url: https://github.com/berkeleybop/bero/releases/download/2022-05-26/bero.owl
aio:
url: https://raw.githubusercontent.com/berkeleybop/artificial-intelligence-ontology/main/aio.owl
reacto:
Expand Down
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