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Add QC plots to MultiQC

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#22 In nf-core/methylarray;

· ajandria opened on Mar 24, 2025

Standardize process inputs/outputs

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#21 In nf-core/methylarray;

· ajandria opened on Mar 24, 2025

[Extras] Investigate possibility of inferring sex of samples and comparing them with sex from the pheno sheet

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#20 In nf-core/methylarray;

· ajandria opened on Mar 24, 2025

Create subworkflows for a given process type

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#19 In nf-core/methylarray;

· ajandria opened on Mar 24, 2025

[Extras] Assess integration of methylCIBERSORT into the methylarray pipeline

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#18 In nf-core/methylarray;

· ajandria opened on Mar 24, 2025

Split the single pipeline container which all processes use into containers used only in a given processes

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#17 In nf-core/methylarray;

· ajandria opened on Mar 24, 2025

Add package versions to conda environment.yaml files

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#16 In nf-core/methylarray;

· ajandria opened on Mar 24, 2025

Make ADJUST_BATCH_EFFECT optional when phenotypes are present

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#14 In nf-core/methylarray;

· ajandria opened on Mar 24, 2025