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Joon-Klaps
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Apr 15, 2026
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| output: | ||
| tuple val(meta), path("*.tsv"), emit: clusters | ||
| tuple val("${task.process}"), val('diamond'), eval("diamond --version | sed 's/diamond version //g'"), emit: versions_diamond, topic: versions |
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| tuple val("${task.process}"), val('diamond'), eval("diamond --version | sed 's/diamond version //g'"), emit: versions_diamond, topic: versions | |
| tuple val("${task.process}"), val('diamond'), eval("diamond --version | sed 's/.* //g'"), emit: versions_diamond, topic: versions |
Look I'm usefull
| """ | ||
| diamond \\ | ||
| deepclust \\ | ||
| ${args} \\ |
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| ${args} \\ | |
| ${args} \\ | |
| --memory-limit "${task.memory.toGiga()}" \\ |
From cli:
--memory-limit Memory limit in GB (default = 16G)
| ${args} \\ | ||
| -p ${task.cpus} \\ | ||
| --db ${fasta} \\ | ||
| --out ${prefix}.tsv |
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Think ur also missing an optional output file. Think we might need to add a save_aln input arg
--aln-out Output file for clustering alignments
| description: Input protein FASTA file to be clustered | ||
| pattern: "*.{fa,faa,fasta,fa.gz,faa.gz,fasta.gz}" | ||
| ontologies: | ||
| - edam: http://edamontology.org/format_1929 # FASTA |
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Aww yeah with comments :D
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PR checklist
topic: versions- See version_topicslabelnf-core modules test <MODULE> --profile dockernf-core modules test <MODULE> --profile singularitynf-core modules test <MODULE> --profile condanf-core subworkflows test <SUBWORKFLOW> --profile dockernf-core subworkflows test <SUBWORKFLOW> --profile singularitynf-core subworkflows test <SUBWORKFLOW> --profile conda