new(github.com/lh3/bwa): bwa 0.7.19#13421
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Burrows-Wheeler Aligner (C). zlib; arm64 builds out of the box via bundled neon_sse.h shim.
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Adds BWA — the Burrows-Wheeler short-read aligner (
bwa), a workhorse alongside the recently-added minimap2/samtools/bcftools. Plain Makefile C, zlib only. v0.7.19 builds cleanly on aarch64 out of the box: bwa ships portable SIMD dispatch (__ARM_NEON-> bundledneon_sse.hSSE2->NEON shim), so no per-arch flag or shim is needed. Verified end-to-end on linux/arm64:bwa index+bwa memalign a fixture read to its reference (flag 0, pos 21, 60M).