Skip to content

Move dependency management to uv#590

Open
molpopgen wants to merge 29 commits intomainfrom
uv
Open

Move dependency management to uv#590
molpopgen wants to merge 29 commits intomainfrom
uv

Conversation

@molpopgen
Copy link
Collaborator

@molpopgen molpopgen commented Mar 13, 2026

  • Move contents from setup.[py|cfg] into pyproject.toml
  • Update github workflows
  • Delete old requirements files

See #589

@codecov
Copy link

codecov bot commented Mar 13, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 99.06%. Comparing base (4bc3f95) to head (e5be9c0).

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #590      +/-   ##
==========================================
- Coverage   99.81%   99.06%   -0.75%     
==========================================
  Files           5        5              
  Lines        1600     1600              
==========================================
- Hits         1597     1585      -12     
- Misses          3       15      +12     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

@molpopgen
Copy link
Collaborator Author

Issues:

  • Our use of jupyter-book requires pinning ipython to a version that requires python >= 3.10. While it may be true that the package itself works as far back as 3.7, we do not test that that is true and it appears that current tooling includes the entire development environment as having the same minimum version.
  • It is not clear that dev.yaml is needed in the work flows any longer?
  • The window tests are failing sporadically.

@molpopgen molpopgen force-pushed the uv branch 3 times, most recently from d9078b3 to 3923460 Compare March 13, 2026 19:25
@molpopgen molpopgen marked this pull request as ready for review March 13, 2026 19:39
@molpopgen
Copy link
Collaborator Author

@grahamgower @apragsdale -- this is ready for a look.

I have shoe-horned most tasks into a place where they now work. The problem is the windows tests. They fail because the modules in demes-spec are not finding ruamel. I cannot reproduce this issue locally, which makes sense because I'm on Linux and the Linux tests are also passing in CI.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant